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Kentaro Inoue Dissertation.pdf (8.93 MB)

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A Comprehensive Approach to Conservation Biology: From Population Genetics to Extinction Risk Assessment for Two Species of Freshwater Mussels

Inoue, Kentaro
http://rave.ohiolink.edu/etdc/view?acc_num=miami1437683696

Abstract Details

2015, Doctor of Philosophy, Miami University, Biology.
Species conservation is an enormously complex task, which includes identification of phenomena that affect the loss, maintenance, and restoration of biodiversity and advocate for sustaining evolutionary processes that promote all levels of biological organization. Endangered species conservation requires a comprehensive approach to evaluate the conservation status of a given species, develop optimal recovery plans, and establish quantitative recovery criteria, in order to remove the necessity of protection. In my dissertation, I demonstrate such a comprehensive approach for evaluating the conservation status of two imperiled freshwater mussel species: Cumberlandia monodonta and Popenaias popeii, and providing guidance for development of species recovery plans. I characterized novel microsatellite markers for the species in order to assess population genetic diversity and structure (Chapter 1 and 3). I assessed fine-scale population structure of C. monodonta and used ecological and genetic simulations to investigate the effects of future climate change on distributional shifts in suitable habitats and population genetic connectivity (Chapter 2). I also investigated evolutionary history and genetic structure of P. popeii and used long-term mark-and-recapture monitoring to determine population dynamics (Chapter 4 and 5). I used demographic and population genetic information acquired from the previous chapters to develop recovery strategies for these species (Chapter 6). Using a large number of polymorphic microsatellite markers for both species, I revealed that climate change during the mid-to-late-Pleistocene likely shaped current distribution and genetic structure in both species. Current genetic structure of C. monodonta is likely a consequence of connectivity of suitable habitat; however, future climate change will likely reduce connectivity across populations. Climate change during the mid-to-late Pleistocene caused regional and local population structures of P. popeii. A long-term demographic study revealed that reduced river discharge is associated with significant decreased survival. Current anthropogenic activities threaten the availability of high-quality habitat for P. popeii. Demographic parameters during early life stages interact to influence the extinction probability and population growth rates for both species. The trajectories of population genetic persistence were influenced by initial allele frequency within populations, population size, and population growth rates. I used freshwater mussels to demonstrate the importance of considering evolution and ecology of organisms when developing species recovery strategies and making conservation decisions. I hope that my dissertation encourages others to utilize ecological and genetic studies in developing recovery plans for species from this and other highly imperiled groups.
David Berg (Advisor)
Bruce Cochrane (Committee Member)
Thomas Crist (Committee Member)
Brian Keane (Committee Member)
Richard Moore (Committee Member)
165 p.
Biology; Conservation; Ecology; Freshwater Ecology; Genetics
conservation genetics; evolutionary biology; population genetics; ecological niche modeling; approximate Bayesian computation; mark-and-recapture; population viability analysis; freshwater mussels; Cumberlandia monodonta; Popenaias popeii;

Recommended Citations

Citations

  • Inoue, K. (2015). A Comprehensive Approach to Conservation Biology: From Population Genetics to Extinction Risk Assessment for Two Species of Freshwater Mussels [Doctoral dissertation, Miami University]. OhioLINK Electronic Theses and Dissertations Center. http://rave.ohiolink.edu/etdc/view?acc_num=miami1437683696

    APA Style (7th edition)

  • Inoue, Kentaro. A Comprehensive Approach to Conservation Biology: From Population Genetics to Extinction Risk Assessment for Two Species of Freshwater Mussels. 2015. Miami University, Doctoral dissertation. OhioLINK Electronic Theses and Dissertations Center, http://rave.ohiolink.edu/etdc/view?acc_num=miami1437683696.

    MLA Style (8th edition)

  • Inoue, Kentaro. "A Comprehensive Approach to Conservation Biology: From Population Genetics to Extinction Risk Assessment for Two Species of Freshwater Mussels." Doctoral dissertation, Miami University, 2015. http://rave.ohiolink.edu/etdc/view?acc_num=miami1437683696

    Chicago Manual of Style (17th edition)

miami1437683696
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© 2015, all rights reserved.
This open access ETD is published by Miami University and OhioLINK.