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Characterization of Leptin Signaling in the Developing Zebrafish (Danio rerio) Using Molecular, Physiological, and Bioinformatic Approaches

Dalman, Mark R.
http://rave.ohiolink.edu/etdc/view?acc_num=akron1418039468

Abstract Details

2014, Doctor of Philosophy, University of Akron, Integrated Bioscience.
In this dissertation, I tested the hypothesis that leptin A in zebrafish (D. rerio) plays a similar role to mammalian leptin in regulating metabolic rate and immune function, whereas leptins’s effects on the zebrafish transcriptome may be distinct. Leptin is now identified in all major vertebrate lineages, but its role in controlling food intake, development, metabolic rate, and fat storage is best studied in mammals. In that group, leptin has pleiotropic effects including those on angiogenesis, bone formation, reproductive status, immune function, and energy expenditure. A homozygous mutation (ob-/ ob-) for leptin is the most common model for leptin study in mammals. The use of leptin-null mutants in non-mammal models is not common. We recently developed a leptin knockdown model in zebrafish and applied a comparative approach to studying some well-characterized mammalian leptin functions in this new system. I tested the impact of leptin expression on metabolism in the developing zebrafish embryo. Leptin knockdown reduced oxygen consumption most prominently during early development (24-48 hours post fertilization, hpf) whereas carbonic acid production was most significantly attenuated later in development (48-72 hpf). Cardiac output was significantly reduced in embryos with reduced leptin expression (leptin morphants); all of these effects could be rescued by co-injection of recombinant fish leptin. The second part of my research focused on the innate immune response. When presented with a bacterial challenge, leptin morphants had reduced macrophage respiratory burst activity and bacterial load clearance was unaffected 12 hours post infection (hpi). By 36 hpi, leptin morphants had significantly increased bacterial burden and reduced survival compared to control embryos. I then focused on the transcriptomic effects of reduced leptin A expression in the developing zebrafish embryo. Microarray analysis identified sensory and development pathways as the most significantly enriched in embryos with leptin expression (at a variance with mammalian adult microarray studies). Citrate synthase, 3-hydroxy acyl-CoA dehydrogenase, and carnitine palimitoyltransferase enzyme assays confirmed the general pattern of reduced aerobic respiration transcripts in leptin morphants. Furthermore, confirmation of microarray by enzyme assays found leptin morphants to have reduced enzymes in fatty acid oxidation and general aerobic respiration. The microarray study was complemented by an analysis of techniques used to filter microarray data. I found that choice of the selection criteria used during analysis can significantly impact data interpretation. I proposed that simultaneous use of two types of cutoffs (significance and fold change) was a `best practice’ in microarray analysis. These studies are among the first to quantify effects of leptin knockdown in the developing zebrafish embryo. Leptin function in nonmammals is conserved with mammalian leptin function in the dimensions of metabolic rate and immune function; its effects on the transcriptome (sensory and developmental pathways) differ from similar studies in mammals. This may reflect an adult bias in mammalian leptin studies.
Richard Londraville, Dr (Advisor)
Qin Liu, Dr (Committee Member)
Zhong-Hui Duan, Dr (Committee Member)
Ahmed Mustafa , Dr (Committee Member)
Brian Bagatto, Dr (Committee Member)
204 p.
Bioinformatics; Molecular Biology
Zebrafish, leptin, morpholino, knockdown, microarray, transcriptome, metabolic rate, immune function, fold change, p value

Recommended Citations

Citations

  • Dalman, M. R. (2014). Characterization of Leptin Signaling in the Developing Zebrafish (Danio rerio) Using Molecular, Physiological, and Bioinformatic Approaches [Doctoral dissertation, University of Akron]. OhioLINK Electronic Theses and Dissertations Center. http://rave.ohiolink.edu/etdc/view?acc_num=akron1418039468

    APA Style (7th edition)

  • Dalman, Mark. Characterization of Leptin Signaling in the Developing Zebrafish (Danio rerio) Using Molecular, Physiological, and Bioinformatic Approaches. 2014. University of Akron, Doctoral dissertation. OhioLINK Electronic Theses and Dissertations Center, http://rave.ohiolink.edu/etdc/view?acc_num=akron1418039468.

    MLA Style (8th edition)

  • Dalman, Mark. "Characterization of Leptin Signaling in the Developing Zebrafish (Danio rerio) Using Molecular, Physiological, and Bioinformatic Approaches." Doctoral dissertation, University of Akron, 2014. http://rave.ohiolink.edu/etdc/view?acc_num=akron1418039468

    Chicago Manual of Style (17th edition)

akron1418039468
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© 2014, all rights reserved.
This open access ETD is published by University of Akron and OhioLINK.
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